Open Data Access

ASTIH: Axon Segmentation
Training Initiative for Histology

A curated collection of diverse microscopy datasets (TEM, SEM, BF) designed to benchmark and train axon and myelin segmentation models.

Get Started Paper (WIP)
ASTIH Dataset Overview

Scalebars: TEM1: 1 μm; TEM2: 4 μm; SEM1: 30 μm; BF1: (left) 100 μm, (right) 50 μm; BF2: 50 μm.

terminal
$ git clone https://github.com/axondeepseg/ASTIH.git Copied!

Datasets

Click on a dataset to see more information.

TEM Sample
TEM

TEM1

Corpus callosum of control and cuprizone-intoxicated mice
TEM Sample
TEM
TEM2

Corpus callosum of control and SRF conditional knockout mice
SEM Sample
SEM
SEM1

Rat spinal cord
BF Sample
BF
BF1

Peripheral rat nerves at different regeneration stages
BF Sample
BF
BF2

Peripheral rabbit nerves in experimental nerve repair study

* The get_data.py script downloads all datasets in the data/ directory.